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The size distribution of airborne bacteria and human pathogenic bacteria in a commercial composting plant

《环境科学与工程前沿（英文）》 2021年 第15卷 第3期 doi: 10.1007/s11783-020-1356-4

摘要：

•Bacterial concentrations from eight stages were 104–105copies/m3.

关键词： Size distribution     Airborne bacteria     Biological diversity     Human pathogenic bacteria     Composting plants    

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CROP DIVERSITY AND SUSTAINABLE AGRICULTURE: MECHANISMS, DESIGNS AND APPLICATIONS

《农业科学与工程前沿（英文）》 2021年 第8卷 第3期   页码 359-361 doi: 10.15302/J-FASE -2021417

摘要：

Intensive monoculture agriculture has contributed greatly to global food supply over many decades, but the excessive use of agricultural chemicals (fertilizers, herbicides and pesticides) and intensive cultivation systems has resulted in negative side effects, such as soil erosion, soil degradation, and non-point source pollution[1]. To many observers, agriculture looms as a major global threat to nature conservation and biodiversity. As noted in the Global Biodiversity Outlook 4[2], the drivers associated with food systems and agriculture account for around 70% and 50% of the projected losses by 2050 of terrestrial and freshwater biodiversity, respectively[3].

In addition, agricultural development and modernization of agriculture has led to a decline in the total number of plant species upon which humans depend for food[4]. Currently, fewer than 200 of some 6000 plant species grown for food contribute substantially to global food output, and only nine species account for 67% of total crop production[3]. The global crop diversity has declined in past decades.

Crop species diversity at a national scale was identified as one of the most important factors that stabilize grain production at a national level[5]. A group of long-term field experiments demonstrated that crop diversity also stabilizes temporal grain productivity at field level[6]. Therefore, maintaining crop diversity at both national and field levels is of considerable importance for food security at national and global scales.

Crop diversity includes temporal (crop rotation) and spatial diversity (e.g., intercropping, agroforestry, cultivar mixtures and cover crops) at field scale. Compared to intensive monocultures, diversified cropping systems provide additional options to support multiple ecosystem functions. For instance, crop diversity may increase above- and belowground biodiversity, improve yield stability, reduce pest and disease damage, reduce uses of chemicals, increase the efficiency of the use land, light water and nutrient resources, and enhance stress resilience in agricultural systems.

To highlight advances in research and use of crop diversity, from developing and developed countries, we have prepared this special issue on “Crop Diversity and Sustainable Agriculture” for Frontiers of Agricultural Sciences and Engineering, mainly focusing on intercropping.

Intercropping, growing at least two crops at the same time as a mixture, for example, in alternate rows or strips, is one effective pathway for increasing crop diversity at the field scale. Over recent decades, there have been substantial advances in terms of understanding of processes between intercropped species and applications in practice. There are 10 articles in this special issue including letters, opinions, review and research articles with contributions from Belgium, China, Denmark, France, Germany, Greece, Italy, the Netherlands, Spain, Switzerlands, UK, and Mexico etc.

The contributors are internationally-active scientists and agronomists contributing to intercropping research and extension. For example, Antoine Messean is coordinator of the EU H2020 Research project DiverIMPACTS “Diversification through rotation, intercropping, multiple cropping, promoted with actors and value chains towards sustainability”. Eric Justes is coordinator of the EU H2020 Research project ReMIX “Redesigning European cropping systems based on species mixtures”. Maria Finckh has worked on crop cultivar mixture and organic agriculture over many years. Henrik Hauggaard-Nielsen has outstanding expertise in intercropping research and applications, moving from detailed studies on species interactions in intercropping to working with farmers and other stakeholders to make intercropping work in practical farming. In addition to these established scientists, young scientists who have taken an interest in intercropping also contribute to the special issue, including Wen-Feng Cong, Yixiang Liu, Qi Wang, Hao Yang and others.

The first contribution to this special issue addresses how to design cropping systems to reach crop diversification, with Wen-Feng Cong and coworkers ( https://doi.org/10.15302/J-FASE-2021392) considering that it is necessary to optimize existing and/or design novel cropping systems based on farming practices and ecological principles, and to strengthen targeted ecosystem services to achieve identified objectives. In addition, the design should consider regional characteristics with the concurrent objectives of safe, nutritious food production and environmental protection.

The benefits of crop diversification have been demonstrated in many studies. Wen-Feng Cong and coworkers describe the benefits of crop diversification at three scales: field, farm, and landscape. Hao Yang and coauthors reviewed the multiple functions of intercropping. Intercropping enhances crop productivity and its stability, it promotes efficient use of resources and saves mineral fertilizer, controls pests and diseases of crops and reduces the use of pesticides. It mitigates climate change by sequestering carbon in soil, reduces non-point source pollution, and increases above- and belowground biodiversity of other taxa at field scale ( https://doi.org/10.15302/J-FASE-2021398).

Eric Justes and coworkers proposed the “4C” framework to help understand the role of species interactions in intercropping ( https://doi.org/10.15302/J-FASE-2021414). The four components are competition, complementary, cooperation (facilitation) and compensation, which work often simultaneously in intercropping. Hao Yang and coworkers used the concept of diversity effect from ecology to understand the contribution of complementarity and selection effects to enhanced productivity in intercropping. The complementarity effect consists of interspecific facilitation and niche differentiation between crop species, whereas the selection effect is mainly derived from competitive processes between species such that one species dominates the other ( https://doi.org/10.15302/J-FASE-2021398). Also, Luis Garcia-Barrios and Yanus A. Dechnik-Vazquez dissected the ecological concept of the complementarity and selection effects to develop a relative multicrop resistance index to analyze the relation between higher multicrop yield and land use efficiency and the different ecological causes of overyielding under two contrasting water stress regimes ( https://doi.org/10.15302/J-FASE-2021412).

Odette Denise Weedon and Maria Renate Finckh found that composite cross populations, with different disease susceptibilities of three winter wheat cultivars, were moderately resistant to brown rust and even to the newly emerged stripe rust races prevalent in Europe since 2011, but performance varied between standard and organic management contexts ( https://doi.org/10.15302/J-FASE-2021394).

Comparing the performance of intercrops and sole crops is critical to make a sound evaluation of the benefits of intercropping and assess interactions between species choice, intercrop design, intercrop management and factors related to the production situation and pedoclimatic context. Wopke van der Werf and coworkers review some of the metrics that could be used in the quantitative synthesis of literature data on intercropping ( https://doi.org/10.15302/J-FASE-2021413).

Interspecific interactions provide some of the advantages of intercropping, and can be divided into above- and belowground interactions. Aboveground interactions can include light and space competition, which is influenced by crop species traits. Root exudates are also important in interspecific interactions between intercropped or rotated species. Qi Wang and coworkers estimated the light interception of growth stage of maize-peanut intercropping and corresponding monocultures, and found that intercropping has higher light interception than monoculture, and increasing plant density did not further increase light interception of intercropping ( https://doi.org/10.15302/J-FASE-2021403). Yuxin Yang and coworkers reported that the root exudates of fennel (Foeniculum vulgare) can reduce infection of tobacco by Phytophthora nicotianae via inhibiting the motility and germination of the spores of the pathogen ( https://doi.org/10.15302/J-FASE-2021399).

Focusing on the application of intercropping, Wen-Feng Cong and coworkers formulated species recommendations for different regions of China for different crop diversity patterns and crop species combinations. These authors also suggested three steps for implementing crop diversification on the North China Plain. Although there are multiple benefits of crop diversification, its extension and application are hindered by various technical, organizational, and institutional barriers along value chains, especially in Europe. Based on the findings of the European Crop Diversification Cluster projects, Antoine Messéan and coworkers suggested that there needs to be more coordination and cooperation between agrifood system stakeholders, and establish multiactor networks, toward an agroecological transition of European agriculture ( https://doi.org/10.15302/J-FASE-2021406). In addition, Henrik Hauggaard-Nielsen and coworkers report the outcomes of a workshop for participatory research to overcome the barriers to enhanced coordination and networking between stakeholders ( https://doi.org/10.15302/J-FASE-2021416).

Intercropping, though highly effective in labor-intensive agriculture, may be difficult to implement in machine-intensive, large-scale modern agriculture because appropriate large equipment is not commercially available for planting and harvesting various crop mixtures grown with strip intercropping[6]. Thus, the appropriate machinery will need to be developed for further practical application in large-scale agriculture.

As the guest editors, we thank all the authors and reviewers for their great contributions to this special issue on “Crop Diversity and Sustainable Agriculture”. We also thank the FASE editorial team for their kind supports.

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Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill

《环境科学与工程前沿（英文）》 2021年 第15卷 第4期 doi: 10.1007/s11783-020-1370-6

摘要：

• Ascomycota was the predominant phylum in sanitary landfill fungal communities.

关键词： Sanitary landfill     Fungal community     Diversity     Saprotroph     Physical habitat     Environmental factor    

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Machinability of ultrasonic vibration-assisted micro-grinding in biological bone using nanolubricant

《机械工程前沿（英文）》 2023年 第18卷 第1期 doi: 10.1007/s11465-022-0717-z

摘要： Bone grinding is an essential and vital procedure in most surgical operations. Currently, the insufficient cooling capacity of dry grinding, poor visibility of drip irrigation surgery area, and large grinding force leading to high grinding temperature are the technical bottlenecks of micro-grinding. A new micro-grinding process called ultrasonic vibration-assisted nanoparticle jet mist cooling (U-NJMC) is innovatively proposed to solve the technical problem. It combines the advantages of ultrasonic vibration (UV) and nanoparticle jet mist cooling (NJMC). Notwithstanding, the combined effect of multi parameter collaborative of U-NJMC on cooling has not been investigated. The grinding force, friction coefficient, specific grinding energy, and grinding temperature under dry, drip irrigation, UV, minimum quantity lubrication (MQL), NJMC, and U-NJMC micro-grinding were compared and analyzed. Results showed that the minimum normal grinding force and tangential grinding force of U-NJMC micro-grinding were 1.39 and 0.32 N, which were 75.1% and 82.9% less than those in dry grinding, respectively. The minimum friction coefficient and specific grinding energy were achieved using U-NJMC. Compared with dry, drip, UV, MQL, and NJMC grinding, the friction coefficient of U-NJMC was decreased by 31.3%, 17.0%, 19.0%, 9.8%, and 12.5%, respectively, and the specific grinding energy was decreased by 83.0%, 72.7%, 77.8%, 52.3%, and 64.7%, respectively. Compared with UV or NJMC alone, the grinding temperature of U-NJMC was decreased by 33.5% and 10.0%, respectively. These results showed that U-NJMC provides a novel approach for clinical surgical micro-grinding of biological bone.

关键词： micro-grinding     biological bone     ultrasonic vibration (UV)     nanoparticle jet mist cooling (NJMC)     grinding force     grinding temperature    

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Grassland management practices in Chinese steppes impact productivity, diversity and the relationship

Yingjun ZHANG, Wenjie LU, Hao ZHANG, Jiqiong ZHOU, Yue SHEN

《农业科学与工程前沿（英文）》 2018年 第5卷 第1期   页码 57-63 doi: 10.15302/J-FASE-2017192

摘要： Grasslands are crucial parts of the terrestrial ecosystem, with an extremely high differentiation of productivity and diversity across spatial scales and land use patterns. The practices employed to manage grassland, such as grazing, haymaking, fertilization or reseeding, can improve the grassland condition. This study focuses on the changes in productivity and diversity and the relationship between them as affected by management practices. Productivity and diversity have unequivocally been altered in response to different management practices. When grazing intensity of a typical steppe increased from 1.5 to 9 sheep per hectare, both productivity and diversity declined. Higher grazing intensity (6 to 9 sheep per hectare) accelerated loss of diversity because of lower productivity. Productivity was significantly improved but diversity was lost by fertilizing. N fertilization also reduced the sensitivity of diversity to productivity. A similar response was found in mown grassland with increased productivity and diversity but their relationship was negatively affected. Mowing also slowed down the decline in diversity as productivity increased. Reseeding purple-flowered alfalfa led to an increased diversity, while yellow-flowered alfalfa increased productivity significantly. The negative productivity-diversity relationship was transformed to a positive one by reseeding alfalfa. These results enhance understanding of how productivity, diversity and their relationships change in response to altered grassland management practices, and support an integrated approach for improving both productivity and diversity.

关键词： diversity     fertilizing     grassland management practice     grazing     mowing     productivity     reseeding    

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Effect of salinity on community structure and naphthalene dioxygenase gene diversity of a halophilic

Tingting Fang, Ruisong Pan, Jing Jiang, Fen He, Hui Wang

《环境科学与工程前沿（英文）》 2016年 第10卷 第6期 doi: 10.1007/s11783-016-0888-0

摘要： Various salinities affected the PAH-biodegrading community structure. Various salinities affected the growth of strains with different salt tolerance. The two genes belonged to a new divergent cluster of the known -like genes. The two main genes had correlations with the phenanthrene degradation. The aim of this study is to analyze the effect of salinity on polycyclic aromatic hydrocarbons (PAHs) biodegradation, community structure and naphthalene dioxygenase gene ( ) diversity of a halophilic bacterial consortium with the denaturing gradient gel electrophoresis (DGGE) approach. The consortium was developed from oil-contaminated saline soil after enrichment for six times, using phenanthrene as the substrate. The prominent species in the bacterial consortium at all salinities were identified as halophilic bacteria , , , , and uncultured bacteria. The predominant microbes gradually changed associating with the saline concentration fluctuations ranging from 0.1% to 25% (w/v). Two alpha subunits were dominant at salinities ranging from 0.1% to 20%, while not been clearly detected at 25% salinity. Consistently, the biodegradation occurred at salinities ranging from 0.1% to 20%, while no at 25% salinity, suggesting the two genes played an important role in the degradation. The phylogenetic analysis revealed that both of the two alpha subunits were related to the classic -like gene from AN10 and PaK1, while one with identity of about 82% and the other one with identity of 90% at amino acid sequence level. We concluded that salinity greatly affected halophilic bacterial community structure and also the functional genes which were more related to biodegradation.

关键词： Phenanthrene     Halophilic bacteria     Gene diversity     Naphthalene dioxygenase genes    

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Primary assessment of the diversity of Omicron sublineages and the epidemiologic features of autumn/winter

《医学前沿（英文）》 2023年 第17卷 第4期   页码 758-767 doi: 10.1007/s11684-022-0981-7

摘要： With the recent ongoing autumn/winter 2022 COVID-19 wave and the adjustment of public health control measures, there have been widespread SARS-CoV-2 infections in Chinese mainland. Here we have analyzed 369 viral genomes from recently diagnosed COVID-19 patients in Shanghai, identifying a large number of sublineages of the SARS-CoV-2 Omicron family. Phylogenetic analysis, coupled with contact history tracing, revealed simultaneous community transmission of two Omicron sublineages dominating the infections in some areas of China (BA.5.2 mainly in Guangzhou and Shanghai, and BF.7 mainly in Beijing) and two highly infectious sublineages recently imported from abroad (XBB and BQ.1). Publicly available data from August 31 to November 29, 2022 indicated an overall severe/critical case rate of 0.035% nationwide, while analysis of 5706 symptomatic patients treated at the Shanghai Public Health Center between September 1 and December 26, 2022 showed that 20 cases (0.35%) without comorbidities progressed into severe/critical conditions and 153 cases (2.68%) with COVID-19-exacerbated comorbidities progressed into severe/critical conditions. These observations shall alert healthcare providers to place more resources for the treatment of severe/critical cases. Furthermore, mathematical modeling predicts this autumn/winter wave might pass through major cities in China by the end of the year, whereas some middle and western provinces and rural areas would be hit by the upcoming infection wave in mid-to-late January 2023, and the duration and magnitude of upcoming outbreak could be dramatically enhanced by the extensive travels during the Spring Festival (January 21, 2023). Altogether, these preliminary data highlight the needs to allocate resources to early diagnosis and effective treatment of severe cases and the protection of vulnerable population, especially in the rural areas, to ensure the country’s smooth exit from the ongoing pandemic and accelerate socio-economic recovery.

关键词： SARS-CoV-2     COVID-19     Omicron     genomic epidemiology    

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生物毒素研究与应用展望

陈冀胜

《中国工程科学》 2003年 第5卷 第2期   页码 16-19

摘要：

生物毒素是一类具有重要意义的生物源化学物质，已知化学结构的毒素可达数千种。生物毒素表现出生源、化学结构、作用机制等多方面的多样性。生物毒素研究已发展成为与多种学科交叉的新学科——毒素学，其发展对于生命化学、生源合成化学、化学生物学、化学生态学、医学、药物学、环境科学均有重要意义，对药物创新研究更具积极作用。许多生物毒素可作为临床药物或导向化合物，并可为药物分子设计提供有价值的新药效模型和结构构架，更能为发现药物新作用靶位发挥特殊作用。

关键词： 生物毒素     生物毒素多样性     有毒生物公害防治     生源合成化学     化学生物学     化学生态学     创新药物研究    

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Phylogenetic diversity of NO reductases, new tools for monitoring, and insights into NO production in

《环境科学与工程前沿（英文）》 2022年 第16卷 第10期 doi: 10.1007/s11783-022-1562-3

摘要：

● 548 representative nor genes were collected to create complete phylogenetic trees.

关键词： N2O     Greenhouse gas     NO reductase     NO dismutase     Primer     Crystal structure    

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Microorganism-derived biological macromolecules for tissue engineering

《医学前沿（英文）》 2022年 第16卷 第3期   页码 358-377 doi: 10.1007/s11684-021-0903-0

摘要： According to literature, certain microorganism productions mediate biological effects. However, their beneficial characteristics remain unclear. Nowadays, scientists concentrate on obtaining natural materials from live creatures as new sources to produce innovative smart biomaterials for increasing tissue reconstruction in tissue engineering and regenerative medicine. The present review aims to introduce microorganism-derived biological macromolecules, such as pullulan, alginate, dextran, curdlan, and hyaluronic acid, and their available sources for tissue engineering. Growing evidence indicates that these materials can be used as biological material in scaffolds to enhance regeneration in damaged tissues and contribute to cosmetic and dermatological applications. These natural-based materials are attractive in pharmaceutical, regenerative medicine, and biomedical applications. This study provides a detailed overview of natural-based biomaterials, their chemical and physical properties, and new directions for future research and therapeutic applications.

关键词： biological macromolecules     regenerative medicine     tissue engineering     exopolysaccharide     carbohydrate    

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Genetic diversity and population structure of indigenous chicken breeds in South China

Xunhe HUANG,Jinfeng ZHANG,Danlin HE,Xiquan ZHANG,Fusheng ZHONG,Weina LI,Qingmei ZHENG,Jiebo CHEN,Bingwang DU

《农业科学与工程前沿（英文）》 2016年 第3卷 第2期   页码 97-101 doi: 10.15302/J-FASE-2016102

摘要： A total of 587 individuals from 12 indigenous chicken breeds from South China and two commercial breeds were genotyped for 26 microsatellites to investigate the genetic diversity and population structure. All microsatellites were found to be polymorphic. The number of alleles per locus ranged from 5 to 36, with an average of 12.10 ± 7.00 (SE). All breeds, except White Recessive Rock, had high allelic polymorphism (>0.5). Higher genetic diversity was revealed in the indigenous chicken breeds rather than in the commercial breeds. Potential introgression from the commercial breeds into the indigenous chickens was also detected. The population structure of these indigenous chicken breeds could be explained by their geographical distribution, which suggested the presence of independent history of breed formation. Data generated in this study will provide valuable information to the conservation for indigenous chicken breeds in future.

关键词： microsatellites     genetic diversity     population structure     indigenous chicken     South China     conservation    

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Low intensity ultrasound stimulates biological activity of aerobic activated sludge

LIU Hong, YAN Yixin, WANG Wenyan, YU Yongyong

《环境科学与工程前沿（英文）》 2007年 第1卷 第1期   页码 67-72 doi: 10.1007/s11783-007-0013-5

摘要： This work aims to explore a procedure to improve biological wastewater treatment efficiency using low intensity ultrasound. The aerobic activated sludge from a municipal wastewater treatment plant was used as the experimental material. Oxygen uptake rate (OUR) of the activated sludge (AS) was determined to indicate the changes of AS activity stimulated by ultrasound at 35 kHz for 0 40 min with ultrasonic intensities of 0 1.2 W/cm. The highest OUR was observed at the ultrasonic intensity of 0.3 W/cm and an irradiation period of 10 min; more than 15% increase was achieved immediately after sonication. More significantly, the AS activity stimulated by ultrasound could last 24 h after sonication, and the AS activity achieved its peak value within 8 h after sonication, or nearly 100% higher than the initial level after sonication. Therefore, to improve the wastewater treatment efficiency of bioreactors, ultrasound with an intensity of 0.3 W/cm could be employed to irradiate a part of the AS in the bioreactor for 10 min every 8 h.

关键词： sonication     irradiation     kHz     treatment efficiency     AS activity    

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Biological conversion pathways of sulfate reduction ammonium oxidation in anammox consortia

Zhen Bi, Deqing Wanyan, Xiang Li, Yong Huang

《环境科学与工程前沿（英文）》 2020年 第14卷 第3期 doi: 10.1007/s11783-019-1217-1

摘要： The SRAO phenomena tended to occur only under certain conditions. High amount of biomass and non-anaerobic condition is requirement for SRAO. Anammox bacteria cannot oxidize ammonium with sulfate as electron acceptor. AOB and AnAOB are mainly responsible for ammonium conversion. Heterotrophic sulfate reduction mainly contributed to sulfate conversion. For over two decades, sulfate reduction with ammonium oxidation (SRAO) had been reported from laboratory experiments. SRAO was considered an autotrophic process mediated by anammox bacteria, in which ammonium as electron donor was oxidized by the electron acceptor sulfate. This process had been attributed to observed transformations of nitrogenous and sulfurous compounds in natural environments. Results obtained differed largely for the conversion mole ratios (ammonium/sulfate), and even the intermediate and final products of sulfate reduction. Thus, the hypothesis of biological conversion pathways of ammonium and sulfate in anammox consortia is implausible. In this study, continuous reactor experiments (with working volume of 3.8L) and batch tests were conducted under normal anaerobic (0.2≤DO<0.5 mg/L) / strict anaerobic (DO<0.2 mg/L) conditions with different biomass proportions to verify the SRAO phenomena and identify possible pathways behind substrate conversion. Key findings were that SRAO occurred only in cases of high amounts of inoculant biomass under normal anaerobic condition, while absent under strict anaerobic conditions for same anammox consortia. Mass balance and stoichiometry were checked based on experimental results and the thermodynamics proposed by previous studies were critically discussed. Thus anammox bacteria do not possess the ability to oxidize ammonium with sulfate as electron acceptor and the assumed SRAO could, in fact, be a combination of aerobic ammonium oxidation, anammox and heterotrophic sulfate reduction processes.

关键词： Anammox bacteria     Autotrophic     Biological conversion     Sulfate reducing ammonium oxidation (SRAO)    

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The abundance, characteristics and diversity of microplastics in the South China Sea: Observation around

Hongzhe Chen , Sumin Wang , Huige Guo , Yunlong Huo , Hui Lin , Yuanbiao Zhang

《环境科学与工程前沿（英文）》 2022年 第16卷 第1期   页码 9-9 doi: 10.1007/s11783-021-1443-1

摘要： Surrounded by emerging markets with considerable plastic consumption, the South China Sea has been a focus area of microplastic research. A survey on the floating microplastics (>0.3 mm) and microplastics ingested by fish and mollusks was conducted around three remote islands here. Compared with the results from several previous studies, a high abundance of floating microplastics (with a median of 1.9 × 105 items/km2 or 0.7 items/m3) was observed, revealing another “hot spot” for microplastics. Polyolefin, especially polypropylene, was the main component. The diversity index and evenness index were calculated and evaluated based on the composition of microplastics. The characteristic peaks of Raman spectra concerning pigmented microplastics were provided. Transparent sheets/films were predominant in the water sample, which was quite different from a similar study in this sea area (8.9% for film), and only 16.4% of floating microplastics (>0.3 mm) were fibers/lines, implying that the main sources of floating microplastics (>0.3 mm) might be household/agricultural consumption activities. The transparent fiber/line was also dominant in organisms. It is suggested that the main sources of microplastics ingested by organisms might be both fabric fibers and fishing/aquaculture.
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Diversity and distribution of proteorhodopsin-containing microorganisms in marine environments

Bo WEI

《环境科学与工程前沿（英文）》 2012年 第6卷 第1期   页码 98-106 doi: 10.1007/s11783-010-0278-y

摘要： Proteorhodopsin (PR) is a recently discovered protein involved in the utilization of light energy. Several studies have shown that PR-containing microorganisms are widespread and compose a large proportion of the biomass in marine ecosystems. A better understanding of the ecological role of PR will help clarify the effect of the global flow of energy and the carbon cycle on marine communities. In this study, a bioinformatical database of PR codon sequences, the Global Distribution Database of Proteorhodopsin (GDDP), as a tool for analyzing the diversity and distribution of PR-containing microorganisms in marine environments throughout the world was designed. The community structure of PR microorganisms were also compared using PCR assays and UniFrac analyses of 12 samples collected from three water layers (0, 75, and 200 m) at four representative sites in the Pacific, Atlantic, and Indian Oceans. The results indicate that PR-containing microorganisms can be grouped into two distribution types: widespread and location-specific. Representative cases of the former include SAR11-PR and HOT2C01-PR. Interestingly, PR communities cluster by geographic locale but not by water depth.

关键词： proteorhodopsin (PR)     microorganism community     diversity     marine environments    

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标题 作者 时间 类型 操作

The size distribution of airborne bacteria and human pathogenic bacteria in a commercial composting plant

期刊论文

CROP DIVERSITY AND SUSTAINABLE AGRICULTURE: MECHANISMS, DESIGNS AND APPLICATIONS

期刊论文

Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill

期刊论文

Machinability of ultrasonic vibration-assisted micro-grinding in biological bone using nanolubricant

期刊论文

Grassland management practices in Chinese steppes impact productivity, diversity and the relationship

Yingjun ZHANG, Wenjie LU, Hao ZHANG, Jiqiong ZHOU, Yue SHEN

期刊论文

Effect of salinity on community structure and naphthalene dioxygenase gene diversity of a halophilic

Tingting Fang, Ruisong Pan, Jing Jiang, Fen He, Hui Wang

期刊论文

Primary assessment of the diversity of Omicron sublineages and the epidemiologic features of autumn/winter

期刊论文

生物毒素研究与应用展望

陈冀胜

期刊论文

Phylogenetic diversity of NO reductases, new tools for monitoring, and insights into NO production in

期刊论文

Microorganism-derived biological macromolecules for tissue engineering

期刊论文

Genetic diversity and population structure of indigenous chicken breeds in South China

Xunhe HUANG,Jinfeng ZHANG,Danlin HE,Xiquan ZHANG,Fusheng ZHONG,Weina LI,Qingmei ZHENG,Jiebo CHEN,Bingwang DU

期刊论文

Low intensity ultrasound stimulates biological activity of aerobic activated sludge

LIU Hong, YAN Yixin, WANG Wenyan, YU Yongyong

期刊论文

Biological conversion pathways of sulfate reduction ammonium oxidation in anammox consortia

Zhen Bi, Deqing Wanyan, Xiang Li, Yong Huang

期刊论文

The abundance, characteristics and diversity of microplastics in the South China Sea: Observation around

Hongzhe Chen , Sumin Wang , Huige Guo , Yunlong Huo , Hui Lin , Yuanbiao Zhang

期刊论文

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